PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00016376-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB_related
Protein Properties Length: 178aa    MW: 19820.8 Da    PI: 4.3078
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00016376-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding271.1e-0811342347
                        -HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqky 47
                        +W++Ia++++ gRt++++k++w+ +
  WALNUT_00016376-RA 11 RWSAIAAKLP-GRTDNEIKNYWHAH 34
                        4*********.***********976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.719139IPR017930Myb domain
SuperFamilySSF466895.77E-81043IPR009057Homeodomain-like
PfamPF002491.3E-61134IPR001005SANT/Myb domain
CDDcd001674.54E-71135No hitNo description
Gene3DG3DSA:1.10.10.601.0E-121136IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MSALLSSIYF RWSAIAAKLP GRTDNEIKNY WHAHLKKHSK NNSSSTTISE LVGTSEEVEA  60
NKNDSSGNQD LQLISDSPKV PNMDGIKGIP TSLQIYMSTN DIVSSSSSTD PPVEDARNQY  120
TIDQDEINFS SSNASEIIQS IWELPYFSFQ DIFMPETDPG FMAPTTARCH QEPMYSDV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.22e-11myb domain protein 15